Changes in the Human Gut Microbiota Associated With Colonization by Blastocystis sp. and Entamoeba spp. in Non-Industrialized Populations.
Even G, Lokmer A, Rodrigues J, Audebert C, Viscogliosi E, Ségurel L and Chabé M

Front. Cell. Infect. Microbiol., March 2021


Respiratory mycobiome and suggestion of inter-kingdom network during acute pulmonary exacerbation in cystic fibrosis.

Soret P, Vandenborght LE, Francis F, Coron N, Enaud R, Avalos M, Schaeverbeke T, Berger P, Fayon M, Thiebaut R, Delhaes L; Mucofong Investigation Group.

Sci Rep. 2020 Feb 27

Porcine bacteriospermia examined by high-throughput sequencing.

Even G, Mottais D, Morien F, Pham MD, Ostergaard A, Martel S, Merlin S, Audebert C.

Theriogenology. 2020 Jan


The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical “Microscope” Affect the Biological Interpretation?

Siegwald L., Caboche S., Even G., Viscogliosi E, Chabé M. and Audebert C.

MDPI, September 2019

The Formation of Glycan-Specific Natural Antibodies Repertoire in GalT-KO Mice Is Determined by Gut Microbiota.

Daniel Bello-Gil, Christophe Audebert, Sara Olivera-Ardid, Magdiel Pérez-Cruz, Gaël Even, Nailya Khasbiullina, Nausicaa Gantois, Nadezhda Shilova, Sophie Merlin, Cristina Costa, Nicolai Bovin and Rafael Mañez

Frontiers in Immunology, March 2019


Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics.

Siegwald L., Touzet H., Lemoine Y., Hot D., Audebert C. & Caboche S.

PLOS ONE, 2017 Jan

Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis. colonization.

Siegwald L., Audebert C., Even G., Viscogliosi E., Caboche S. & Chabé M.



Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota.

Audebert C., Even G., Cian A., The Blastocystis Investigation Group, Loywick A., Merlin S., Viscogliosi E. & Chabé M.

Scientific Reports, 2016 May

Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation.

Nguyen LD., Deschaght P., Merlin S., Loywick A., Audebert C., Van Daele S., Viscogliosi E., Vaneechoutte M., Delhaes L.

PLoS One, 2016 Dec


Photodynamic therapy relieves colitis and prevents colitis-associated carcinogenesis in mice.

Reinhard A., Bressenot A., Dassonneville R., Loywick A., Hot D., Audebert C., Marchal S., Guillemin F., Chamaillard M., Peyrin-Biroulet L., Bezdetnaya L.

Inflamm Bowel Dis. 2015 May

49 Propidium monoazide (PMA) sample pretreatment impacts the abundance of rare populations in high-throughput sequencing analysis of CF lung mycobiome and bacteriome.

Nguyena L., Deschaght P., Merlin S., Loywick A., Audebert C., Viscogliosi E., Vaneechoutte M., Delhaes L.

Journal of Cystic Fibrosis, Volume 14, Supplement 1, June 2015, Pages S70, Abstracts of the 38th European Cystic Fibrosis Conference