Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates.

Audebert C, Bonardi F, Caboche S, Guyot K, Touzet H, Merlin S, Gantois N, Creusy C, Meloni D, Mouray A, Viscogliosi E, Certad G, Benamrouz-Vanneste S, Chabé M.

Sci Rep. 2020 Apr


Prospects for applications in human health of nanopore-based sequencing.

Audebert C., Hot D., & Caboche S.

Medecine Science, April 2018


MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data.

Ségolène Caboche, Gaël Even, Alexandre Loywick, Christophe Audebert and David Hot



A review of methods for nematode identification.

Seesao Y, Gay M, Merlin S, Viscogliosi E, Aliouat-Denis CM, Audebert C.

J Microbiol Methods, 2016 Jun


High-Throughput Sequencing, a Versatile Weapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology.

Caboche S, Audebert C, Hot D

Pathogens 2014 2 Apr 2, 3, 258-279

Cryptosporidium parvum-induced ileo-caecal adenocarcinoma and WNT signaling in a rodent model.

Benamrouz S, Conseil V, Chabe M, Praet M, Audebert C, Blervaque R, Guyot K, Gazzola S, Mouray A, Chassat T, Delaire B, Goetinck N, Gantois N, Osman M, Slomianny C, Dehennaut V, Lefebvre T, Viscogliosi E, Cuvelier C, Dei-Cas E, Creusy C, Certad G.

Dis Model Mech. 2014 Mar 2

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.

Caboche S, Audebert C, Lemoine Y, Hot D

BMC Genomics. 2014 Apr 5;15(1):264

Monitoring of four DNA extraction methods upstream of high-throughput sequencing of Anisakidae nematodes.

Seesao Y, Audebert C, Verrez-Bagnis V, Merlin S, Jérôme M, Viscogliosi E, Dei-Cas E, Aliouat-Denis CM, Gay M.

J Microbiol Methods. 2014 May 15, pii: S0167-7012(14)00125-0

Le séquençage haut-débit – Vers un diagnostic basé sur la séquence complète du génome de l’agent infectieux (High-throughput sequencing: towards a genome-based diagnosis in infectious diseases).

Audebert C,Hot D, Lemoine Y and Caboche S

Med Sci (Paris). 2014 Dec;30(12):1144-51